BIOINFORMATICS MSc.

PROBABILITY AND STATISTICS 2004-2005

Course Material

• Material from the course (handouts, exercises)

Projects for Summer 2005

• Projects

Exam Material : Past Papers

• 2001-2002 Mock Exam   Solutions
• 2001-2002 Exam  Solutions
• 2002-2003 Exam  Solutions
• 2003-2004 Exam  Solutions

Exam Material : Formula Sheet and Tables

• Formula Sheet
• Normal Table
• Student-T table
• Chi-squared table
• Fisher F-table.pdf

Data sets

• BRCA2 segment direct from the NCBI site   http://www.ncbi.nlm.nih.gov/
• A processed version with base characters
• Another processed version
• TMP proteinlengthdata.txt Transmembrane Proteins
• proteinlengthdata.txt Randomly selected proteins
• Alldata.zip The Golub Data golub.pdf The Golub et al. paper
• Cluster.zip for Exercise 4

• Raw Complete_Dataset.xls
• Processed PhaseAnalysis.xls (Excel)  PhaseAnalysis.csv (comma delimited)
• My First Analysis

Papers

• Dudoit et al. (2001) Statistical Analysis of Microarray Data and Differential Expression
• Significance Analysis of Microarrays   http://www-stat.stanford.edu/~tibs/SAM/
• Reiner et al. (2003) False Discovery Rate in detecting Differentially Expressed Genes.
• Bozdech (et al.) (2003) on the CAMDA data

SPLUS 2000 Information

• A tutorial from the Manufacturers, Mathsoft
 
• The manual, part 1
 
• The manual, part 2